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Classification of Transcription Factors in Mammalia

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Superclass: , Class: ,
Family: , Subfamily: , Genus: ,
  • 3 Helix-turn-helix domains
    • 3.1 Homeo domain factors
      • 3.1.1 HOX
        • 3.1.1.9 CDX
General

Species within this Genus: 34 LOGO plot of the DNA binding sequence LOGO plot

Species specific reports

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Ailuropoda melanoleuca

Synonyms: giant panda

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Bos taurus

Synonyms: cattle, domestic cow

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Callithrix jacchus

Synonyms: white-tufted-ear marmoset, white ear-tufted marmoset

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Canis lupus familiaris

Synonyms: dog, dogs

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Cavia porcellus

Synonyms: domestic guinea pig, guinea pig

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Dasypus novemcinctus

Synonyms: nine-banded armadillo

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Dipodomys ordii

Synonyms: Ord's kangaroo rat

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Echinops telfairi

Synonyms: small Madagascar hedgehog, lesser hedgehog tenrec

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Equus caballus

Synonyms: horse, equine

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Felis catus

Synonyms: domestic cat, cats

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Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

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Homo sapiens

Synonyms: human, man

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Protein expression pattern:Show table
Isoforms and DNA binding domain
Ictidomys tridecemlineatus

Synonyms: thirteen-lined ground squirrel

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Loxodonta africana

Synonyms: African savanna elephant, African savannah elephant

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Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

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Macropus eugenii

Synonyms: tammar wallaby

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Microcebus murinus

Synonyms: gray mouse lemur, grey mouse lemur

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Monodelphis domestica

Synonyms: gray short-tailed opossum

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Mus musculus

Synonyms: house mouse, mouse

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Isoforms and DNA binding domain
Mustela putorius furo

Synonyms: domestic ferret, ferret

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Myotis lucifugus

Synonyms: little brown bat

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Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

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Ochotona princeps

Synonyms: American pika, southern American pika

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Oryctolagus cuniculus

Synonyms: rabbit, rabbits

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Otolemur garnettii

Synonyms: small-eared galago

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Ovis aries

Synonyms: sheep, wild sheep

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Pan troglodytes

Synonyms: chimpanzee

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Pongo abelii

Synonyms: Sumatran orangutan, orang utan

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Procavia capensis

Synonyms: Cape rock hyrax, rock hyrax

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Pteropus vampyrus

Synonyms: large flying fox

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Rattus norvegicus

Synonyms: Norway rat, rats

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Isoforms and DNA binding domain
Sarcophilus harrisii

Synonyms: Tasmanian devil

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Sus scrofa

Synonyms: pig, wild boar

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Tupaia belangeri

Synonyms: northern tree shrew, common tree shrew

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Expression table
The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology
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TissueCell typeExpression levelTypeReliability
adrenal glandglandular tissueNegativeStainingSupportive
appendixglandular tissueStrongStainingSupportive
appendixlymphoid tissueNegativeStainingSupportive
bone barrowhematopoetic stem cellNegativeStainingSupportive
breastglandular tissueNegativeStainingSupportive
bronchiciliated call with propulsive function of respiratory tractNegativeStainingSupportive
cerebellumgranule cellNegativeStainingSupportive
cerebellumNegativeStainingSupportive
cerebellumpurkinje cellNegativeStainingSupportive
cerebral cortexglial cell of central nervous systemNegativeStainingSupportive
cerebral cortexneuronNegativeStainingSupportive
cervix of uterusglandular tissueNegativeStainingSupportive
cervix of uterussquamous epithelial cellNegativeStainingSupportive
colonglandular tissueStrongStainingSupportive
duodenumglandular tissueStrongStainingSupportive
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