Transcription factor classification

Status

Please wait ...

Searches in the label, ID and external references.

Superclass:

, Class:

,
Family:

, Subfamily:

, Genus:

1 Basic domains
2 Zinc-coordinating DNA-binding domains
- 2.1 Nuclear receptors with C4 zinc fingers
- 2.2 Other C4 zinc finger-type factors
- 2.3 C2H2 zinc finger factors
  - 2.3.1 Three-zinc finger Krüppel-related
  - 2.3.2 Other factors with up to three adjacent zinc fingers
  - 2.3.3 More than 3 adjacent zinc fingers
  - 2.3.4 Factors with multiple dispersed zinc fingers
    - 2.3.4.1 ZNF417-like
    - 2.3.4.2 ZNF219-like
    - 2.3.4.3 SAL-like
    - 2.3.4.4 Ikaros
    - 2.3.4.5 HIV EP
    - 2.3.4.6 ZBTB1-like
    - 2.3.4.7 RLF-like
    - 2.3.4.8 MAZ-like
    - 2.3.4.9 ZNF532-like
    - 2.3.4.10 ZNF512
    - 2.3.4.11 ZNF658
    - 2.3.4.12 ZNF423-like
    - 2.3.4.13 ZNF639-like
    - 2.3.4.14 EVI1-like
    - 2.3.4.15 BCL11
    - 2.3.4.16 Insulinoma-associated proteins
    - 2.3.4.17 HIC
    - 2.3.4.18 ZNF518
    - 2.3.4.19 Basonuclin
    - 2.3.4.20 TRERF1-like
    - 2.3.4.21 HINFP-like
    - 2.3.4.22 ZNF526-like
    - 2.3.4.23 ZNF319-like
    - 2.3.4.24 ZNF134-like
      - 2.3.4.24.1 ZNF134
      - 2.3.4.24.2 ZNF671
      - 2.3.4.24.3 ZNF772
      - 2.3.4.24.4 ZNF792
    - 2.3.4.25 ZNF37A-like
    - 2.3.4.0.1 CASZ1
    - 2.3.4.0.2 ZNF335
    - 2.3.4.0.4 WIZ
    - 2.3.4.0.5 ZNF469
    - 2.3.4.0.6 ZFPM1
    - 2.3.4.0.7 ZBTB4
    - 2.3.4.0.9 ZBTB39
    - 2.3.4.0.10 ZNF295
    - 2.3.4.0.12 PRDM13
    - 2.3.4.0.13 ZNF646
    - 2.3.4.0.14 ZNF579
    - 2.3.4.0.16 PRDM2
    - 2.3.4.0.17 ZNF800
    - 2.3.4.0.18 ZNF618
    - 2.3.4.0.21 ZNF451
    - 2.3.4.0.22 ZNF438
    - 2.3.4.0.24 ZNF507
    - 2.3.4.0.25 ZNF236
    - 2.3.4.0.26 ZNF770
    - 2.3.4.0.28 ZFP57
    - 2.3.4.0.30 ZNF597
    - 2.3.4.0.32 PRDM15
    - 2.3.4.0.33 ZBTB41
    - 2.3.4.0.34 PRDM10
    - 2.3.4.0.36 ZNF513
    - 2.3.4.0.37 ZNF142
    - 2.3.4.0.38 FIZ1
    - 2.3.4.0.40 ZNF784
    - 2.3.4.0.41 ZNF697
    - 2.3.4.0.42 ZKSCAN5
    - 2.3.4.0.44 ZNF775
    - 2.3.4.0.45 ZNF467
    - 2.3.4.0.46 ZNF787
    - 2.3.4.0.48 ZNF48
    - 2.3.4.0.49 ZNF629
    - 2.3.4.0.50 ZNF668
    - 2.3.4.0.51 ZNF101
    - 2.3.4.0.52 ZNF251
    - 2.3.4.0.53 ZNF445
    - 2.3.4.0.56 ZSCAN20
    - 2.3.4.0.57 ZNF674
    - 2.3.4.0.60 ZNF788
    - 2.3.4.0.63 ZNF778
    - 2.3.4.0.68 ZNF519
    - 2.3.4.0.69 ZNF304
    - 2.3.4.0.70 ZNF132
    - 2.3.4.0.72 ZBTB17
    - 2.3.4.0.73 ZNF407
    - 2.3.4.0.74 E4F1
    - 2.3.4.0 unclassified
    - 2.3.4.0.3 PRDM8
    - 2.3.4.0.8 ZBTB38
    - 2.3.4.0.15 RREB1
    - 2.3.4.0.19 ZNF277
    - 2.3.4.0.23 PEG3
    - 2.3.4.0.27 REST
    - 2.3.4.0.31 PRDM4
    - 2.3.4.0.35 ZNF341
    - 2.3.4.0.39 ZNF628
    - 2.3.4.0.43 ZNF316
    - 2.3.4.0.59 ZNF195
    - 2.3.4.0.67 ZNF606
    - 2.3.4.0.71 PRDM9
    - 2.3.4.0.75 ZNF462
    - 2.3.4.0.76 ZNF644
  - 2.3.5 BED zinc finger factors
- 2.5 DM-type intertwined zinc finger factors
- 2.6 CXXC zinc finger factors
- 2.7 C2HC
- 2.8 C3H zinc finger factors
- 2.9 C2CH THAP-type zinc finger factors
3 Helix-turn-helix domains
4 Other all-alpha-helical DNA-binding domains
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 16

Species specific reports

Jump to human, mouse or rat
Hint: You can rearrange the panels by drag-and-drop. The new arrangement will persist during your session.

Bos taurus

Synonyms: cattle, domestic cow

Outlinks

Ensembl gene: ENSBTAG00000038240

Canis lupus familiaris

Synonyms: dog, dogs

Outlinks

Ensembl: ENSCAFG00000031283

Choloepus hoffmanni

Synonyms: Hoffmann's two-fingered sloth, Hoffmann's two-toed sloth

Outlinks

Ensembl gene: ENSCHOG00000001668
UniProt: NA

Equus caballus

Synonyms: horse, equine

Outlinks

Ensembl gene: ENSECAG00000013270

Felis catus

Synonyms: domestic cat, cats

Outlinks

Ensembl gene: ENSFCAG00000030721

Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

Outlinks

Ensembl gene: ENSGGOG00000002668

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000213762
Ensembl gene: ENSG00000213762
ProteinAtlas: ENSG00000213762 ( with antibody)
TRANSFAC: T20371
UniProt: P52741

Protein expression pattern:Show tableIsoforms and DNA binding domain

Mustela putorius furo

Synonyms: domestic ferret, ferret

Outlinks

Ensembl: ENSMPUG00000006246

Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

Outlinks

Ensembl gene: ENSNLEG00000010985
UniProt: NA

Ochotona princeps

Synonyms: American pika, southern American pika

Outlinks

Ensembl gene: ENSOPRG00000011742
UniProt: NA

Oryctolagus cuniculus

Synonyms: rabbit, rabbits

Outlinks

Ensembl gene: ENSOCUG00000029572

Otolemur garnettii

Synonyms: small-eared galago

Outlinks

Ensembl gene: ENSOGAG00000029871

Ovis aries

Synonyms: sheep, wild sheep

Outlinks

Ensembl gene: ENSOARG00000014715

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl gene: ENSPTRG00000033996

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl gene: ENSPPYG00000010474

Sus scrofa

Synonyms: pig, wild boar

Outlinks

Ensembl gene: ENSSSCG00000003984

Select species

Selected the species for which a species report should be shown.

Ailuropoda melanoleuca, giant panda
Bos taurus, cattle
Callithrix jacchus, white-tufted-ear marmoset
Canis lupus familiaris, dog
Cavia porcellus, domestic guinea pig
Choloepus hoffmanni, Hoffmann's two-fingered sloth
Dasypus novemcinctus, nine-banded armadillo
Dipodomys ordii, Ord's kangaroo rat
Echinops telfairi, small Madagascar hedgehog
Equus caballus, horse
Erinaceus europaeus, western European hedgehog
Felis catus, domestic cat
Gorilla gorilla gorilla, western lowland gorilla
Homo sapiens, human
Ictidomys tridecemlineatus, thirteen-lined ground squirrel
Loxodonta africana, African savanna elephant
Macaca mulatta, Rhesus monkey
Macropus eugenii, tammar wallaby
Microcebus murinus, gray mouse lemur
Monodelphis domestica, gray short-tailed opossum
Mus musculus, house mouse
Mustela putorius furo, domestic ferret
Myotis lucifugus, little brown bat
Nomascus leucogenys, northern white-cheeked gibbon
Ochotona princeps, American pika
Ornithorhynchus anatinus, platypus
Oryctolagus cuniculus, rabbit
Otolemur garnettii, small-eared galago
Ovis aries, sheep
Pan troglodytes, chimpanzee
Pongo abelii, Sumatran orangutan
Procavia capensis, Cape rock hyrax
Pteropus vampyrus, large flying fox
Rattus norvegicus, Norway rat
Sarcophilus harrisii, Tasmanian devil
Sorex araneus, European shrew
Sus scrofa, pig
Tarsius syrichta, Philippine tarsier
Tupaia belangeri, northern tree shrew
Tursiops truncatus, bottlenose dolphin
Vicugna pacos, alpaca

Expression table

The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology

pp12345pp

Tissue	Cell type	Expression level	Type	Reliability
adrenal gland	glandular tissue	Strong	Staining	Supportive
appendix	glandular tissue	Strong	Staining	Supportive
appendix	lymphoid tissue	Moderate	Staining	Supportive
bone barrow	hematopoetic stem cell	Strong	Staining	Supportive
breast	glandular tissue	Negative	Staining	Supportive
bronchi	ciliated call with propulsive function of respiratory tract	Moderate	Staining	Supportive
cerebellum	granule cell	Moderate	Staining	Supportive
cerebellum		Moderate	Staining	Supportive
cerebellum	purkinje cell	Strong	Staining	Supportive
cerebral cortex	glial cell of central nervous system	Moderate	Staining	Supportive
cerebral cortex	neuron	Moderate	Staining	Supportive
cervix of uterus	glandular tissue	Strong	Staining	Supportive
cervix of uterus	squamous epithelial cell	Strong	Staining	Supportive
colon	glandular tissue	Strong	Staining	Supportive
duodenum	glandular tissue	Moderate	Staining	Supportive

pp12345pp

Classification of Transcription Factors in Mammalia

About TFClass

Search in TFClass:

Species specific reports

Classification of Transcription Factors in Mammalia

About TFClass

Search in TFClass: ?PrimeFaces.cw('Button','widget_classificationForm_searchHelpButton',{id:'classificationForm:searchHelpButton'});

Species specific reports

Search in TFClass: