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Classification of Transcription Factors in Mammalia

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Superclass: , Class: ,
Family: , Subfamily: , Genus: ,
  • 2 Zinc-coordinating DNA-binding domains
    • 2.1 Nuclear receptors with C4 zinc fingers
      • 2.1.2 Thyroid hormone receptor-related factors
        • 2.1.2.6 ROR(NR1F)
General

Species within this Genus: 33 LOGO plot of the DNA binding sequence LOGO plot

Species specific reports

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Ailuropoda melanoleuca

Synonyms: giant panda

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Bos taurus

Synonyms: cattle, domestic cow

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Callithrix jacchus

Synonyms: white-tufted-ear marmoset, white ear-tufted marmoset

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Canis lupus familiaris

Synonyms: dog, dogs

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Cavia porcellus

Synonyms: domestic guinea pig, guinea pig

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Dasypus novemcinctus

Synonyms: nine-banded armadillo

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Dipodomys ordii

Synonyms: Ord's kangaroo rat

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Equus caballus

Synonyms: horse, equine

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Felis catus

Synonyms: domestic cat, cats

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Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

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Homo sapiens

Synonyms: human, man

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Protein expression pattern:Show table
Isoforms and DNA binding domain
Ictidomys tridecemlineatus

Synonyms: thirteen-lined ground squirrel

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Loxodonta africana

Synonyms: African savanna elephant, African savannah elephant

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Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

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Microcebus murinus

Synonyms: gray mouse lemur, grey mouse lemur

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Monodelphis domestica

Synonyms: gray short-tailed opossum

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Mus musculus

Synonyms: house mouse, mouse

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Isoforms and DNA binding domain
Mustela putorius furo

Synonyms: domestic ferret, ferret

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Myotis lucifugus

Synonyms: little brown bat

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Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

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Ornithorhynchus anatinus

Synonyms: platypus, duckbill platypus

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Oryctolagus cuniculus

Synonyms: rabbit, rabbits

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Otolemur garnettii

Synonyms: small-eared galago

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Ovis aries

Synonyms: sheep, wild sheep

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Pan troglodytes

Synonyms: chimpanzee

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Pongo abelii

Synonyms: Sumatran orangutan, orang utan

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Procavia capensis

Synonyms: Cape rock hyrax, rock hyrax

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Pteropus vampyrus

Synonyms: large flying fox

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Rattus norvegicus

Synonyms: Norway rat, rats

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Sarcophilus harrisii

Synonyms: Tasmanian devil

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Sus scrofa

Synonyms: pig, wild boar

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Tupaia belangeri

Synonyms: northern tree shrew, common tree shrew

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Tursiops truncatus

Synonyms: bottlenose dolphin, bottle-nosed dolphin

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Expression table
The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology
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TissueCell typeExpression levelTypeReliability
adrenal glandglandular tissueModerateStainingSupportive
appendixglandular tissueStrongStainingSupportive
appendixlymphoid tissueModerateStainingSupportive
bone barrowhematopoetic stem cellStrongStainingSupportive
breastglandular tissueModerateStainingSupportive
bronchiciliated call with propulsive function of respiratory tractStrongStainingSupportive
cerebellumgranule cellModerateStainingSupportive
cerebellumStrongStainingSupportive
cerebellumpurkinje cellWeakStainingSupportive
cerebral cortexglial cell of central nervous systemStrongStainingSupportive
cerebral cortexneuronModerateStainingSupportive
cervix of uterusglandular tissueStrongStainingSupportive
cervix of uterussquamous epithelial cellStrongStainingSupportive
colonglandular tissueStrongStainingSupportive
duodenumglandular tissueStrongStainingSupportive
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