Classification of Transcription Factors in Mammalia

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Family:

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1 Basic domains
2 Zinc-coordinating DNA-binding domains
3 Helix-turn-helix domains
4 Other all-alpha-helical DNA-binding domains
- 4.1 High-mobility group (HMG) domain factors
  - 4.1.1 SOX-related
    - 4.1.1.1 Group A
    - 4.1.1.2 Group B
    - 4.1.1.3 Group C
      - 4.1.1.3.1 SOX4
      - 4.1.1.3.2 SOX11
      - 4.1.1.3.3 SOX12
    - 4.1.1.4 Group D
    - 4.1.1.5 Group E
    - 4.1.1.6 Group F
    - 4.1.1.7 Group G
    - 4.1.1.8 Group H
    - 4.1.1.9 Further SOX-related
  - 4.1.2 TOX-related
  - 4.1.3 TCF7-related
  - 4.1.4 PBRM1-related
  - 4.1.5 WHSC1-related
  - 4.1.6 UBF-related
  - 4.1.7 TFAM
- 4.2 Heteromeric CCAAT-binding factors
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 17

Species specific reports

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Canis lupus familiaris

Synonyms: dog, dogs

Outlinks

Ensembl: ENSCAFG00000006973

Cavia porcellus

Synonyms: domestic guinea pig, guinea pig

Outlinks

Ensembl: ENSCPOG00000010342

Dasypus novemcinctus

Synonyms: nine-banded armadillo

Outlinks

Ensembl gene: ENSDNOG00000044763
Ensembl gene: ENSDNOG00000032024

Equus caballus

Synonyms: horse, equine

Outlinks

Ensembl gene: ENSECAG00000001018

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000177732
Ensembl gene: ENSG00000177732
ProteinAtlas: ENSG00000177732 ( without antibody)
TRANSFAC: T02895
UniProt: O15370

Isoforms and DNA binding domain

Monodelphis domestica

Synonyms: gray short-tailed opossum

Outlinks

Ensembl gene: ENSMODG00000019507
UniProt: NA

Mus musculus

Synonyms: house mouse, mouse

Outlinks

Ensembl gene: ENSMUSG00000051817
TRANSFAC: T16937
UniProt: Q04890

Isoforms and DNA binding domain

Otolemur garnettii

Synonyms: small-eared galago

Outlinks

Ensembl gene: ENSOGAG00000024255

Ovis aries

Synonyms: sheep, wild sheep

Outlinks

Ensembl gene: ENSOARG00000019159

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl gene: ENSPTRG00000030670

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl gene: ENSPPYG00000010870

Procavia capensis

Synonyms: Cape rock hyrax, rock hyrax

Outlinks

Ensembl gene: ENSPCAG00000006911
UniProt: NA

Pteropus vampyrus

Synonyms: large flying fox

Outlinks

Ensembl gene: ENSPVAG00000000181
UniProt: NA

Rattus norvegicus

Synonyms: Norway rat, rats

Outlinks

Ensembl gene: ENSRNOG00000007514

Sarcophilus harrisii

Synonyms: Tasmanian devil

Outlinks

Ensembl gene: ENSSHAG00000004381
UniProt: NA

Sus scrofa

Synonyms: pig, wild boar

Outlinks

Ensembl gene: ENSSSCG00000021920

Tursiops truncatus

Synonyms: bottlenose dolphin, bottle-nosed dolphin

Outlinks

Ensembl gene: ENSTTRG00000008502
UniProt: NA