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Classification of Transcription Factors in Mammalia

About TFClass

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Superclass:

, Class:

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Family:

, Subfamily:

, Genus:

,

1 Basic domains
2 Zinc-coordinating DNA-binding domains
3 Helix-turn-helix domains
4 Other all-alpha-helical DNA-binding domains
- 4.1 High-mobility group (HMG) domain factors
  - 4.1.1 SOX-related
    - 4.1.1.1 Group A
    - 4.1.1.2 Group B
      - 4.1.1.2.1 SOX1
      - 4.1.1.2.2 SOX2
      - 4.1.1.2.3 SOX3
      - 4.1.1.2.4 SOX14
      - 4.1.1.2.5 SOX21
    - 4.1.1.3 Group C
    - 4.1.1.4 Group D
    - 4.1.1.5 Group E
    - 4.1.1.6 Group F
    - 4.1.1.7 Group G
    - 4.1.1.8 Group H
    - 4.1.1.9 Further SOX-related
  - 4.1.2 TOX-related
  - 4.1.3 TCF7-related
  - 4.1.4 PBRM1-related
  - 4.1.5 WHSC1-related
  - 4.1.6 UBF-related
  - 4.1.7 TFAM
- 4.2 Heteromeric CCAAT-binding factors
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 13 LOGO plot of the DNA binding sequence

Species specific reports

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Bos taurus

Synonyms: cattle, domestic cow

Outlinks

Ensembl gene: ENSBTAG00000038272

Callithrix jacchus

Synonyms: white-tufted-ear marmoset, white ear-tufted marmoset

Outlinks

Ensembl gene: ENSCJAG00000032566

Canis lupus familiaris

Synonyms: dog, dogs

Outlinks

Ensembl: ENSCAFG00000006137

Dasypus novemcinctus

Synonyms: nine-banded armadillo

Outlinks

Ensembl gene: ENSDNOG00000023758

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000182968
Ensembl gene: ENSG00000182968
ProteinAtlas: ENSG00000182968 ( without antibody)
TRANSFAC: T06027
UniProt: O00570

Isoforms and DNA binding domain

Macropus eugenii

Synonyms: tammar wallaby

Outlinks

Ensembl: ENSMEUG00000016617

Monodelphis domestica

Synonyms: gray short-tailed opossum

Outlinks

Ensembl gene: ENSMODG00000004267
UniProt: NA

Mus musculus

Synonyms: house mouse, mouse

Outlinks

Ensembl gene: ENSMUSG00000096014
TRANSFAC: T06025
UniProt: P53783

Isoforms and DNA binding domain

Oryctolagus cuniculus

Synonyms: rabbit, rabbits

Outlinks

Ensembl gene: ENSOCUG00000017925

Otolemur garnettii

Synonyms: small-eared galago

Outlinks

Ensembl gene: ENSOGAG00000034416

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl gene: ENSPTRG00000040942

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl gene: ENSPPYG00000005512

Vicugna pacos

Synonyms: alpaca

Outlinks

Ensembl gene: ENSVPAG00000003952
UniProt: NA

Select species

Selected the species for which a species report should be shown.

Ailuropoda melanoleuca, giant panda
Bos taurus, cattle
Callithrix jacchus, white-tufted-ear marmoset
Canis lupus familiaris, dog
Cavia porcellus, domestic guinea pig
Choloepus hoffmanni, Hoffmann's two-fingered sloth
Dasypus novemcinctus, nine-banded armadillo
Dipodomys ordii, Ord's kangaroo rat
Echinops telfairi, small Madagascar hedgehog
Equus caballus, horse
Erinaceus europaeus, western European hedgehog
Felis catus, domestic cat
Gorilla gorilla gorilla, western lowland gorilla
Homo sapiens, human
Ictidomys tridecemlineatus, thirteen-lined ground squirrel
Loxodonta africana, African savanna elephant
Macaca mulatta, Rhesus monkey
Macropus eugenii, tammar wallaby
Microcebus murinus, gray mouse lemur
Monodelphis domestica, gray short-tailed opossum
Mus musculus, house mouse
Mustela putorius furo, domestic ferret
Myotis lucifugus, little brown bat
Nomascus leucogenys, northern white-cheeked gibbon
Ochotona princeps, American pika
Ornithorhynchus anatinus, platypus
Oryctolagus cuniculus, rabbit
Otolemur garnettii, small-eared galago
Ovis aries, sheep
Pan troglodytes, chimpanzee
Pongo abelii, Sumatran orangutan
Procavia capensis, Cape rock hyrax
Pteropus vampyrus, large flying fox
Rattus norvegicus, Norway rat
Sarcophilus harrisii, Tasmanian devil
Sorex araneus, European shrew
Sus scrofa, pig
Tarsius syrichta, Philippine tarsier
Tupaia belangeri, northern tree shrew
Tursiops truncatus, bottlenose dolphin
Vicugna pacos, alpaca

Expression table

The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology