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Classification of Transcription Factors in Mammalia

About TFClass

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1 Basic domains
2 Zinc-coordinating DNA-binding domains
3 Helix-turn-helix domains
4 Other all-alpha-helical DNA-binding domains
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
- 8.1 TATA-binding proteins
- 8.2 A.T hook factors
  - 8.2.1 HMGA
    - 8.2.1.0.1 HMGA1
    - 8.2.1.0.2 HMGA2
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 12

Species specific reports

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Callithrix jacchus

Synonyms: white-tufted-ear marmoset, white ear-tufted marmoset

Outlinks

Dasypus novemcinctus

Synonyms: nine-banded armadillo

Outlinks

Ensembl: ENSDNOG00000048093

Dipodomys ordii

Synonyms: Ord's kangaroo rat

Outlinks

Ensembl: ENSDORG00000004524

Felis catus

Synonyms: domestic cat, cats

Outlinks

Ensembl: ENSFCAG00000015351

Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

Outlinks

Ensembl: ENSGGOG00000025804

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000137309
Ensembl: ENSG00000137309
ProteinAtlas: ENSG00000137309 ( with antibody)
TRANSFAC: T02368

Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

Outlinks

Ensembl: ENSMMUG00000019529
Ensembl: ENSMMUG00000018099

Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

Outlinks

Ensembl: ENSNLEG00000008303
Ensembl: ENSNLEG00000018654

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl: ENSPPYG00000002141

Procavia capensis

Synonyms: Cape rock hyrax, rock hyrax

Outlinks

Ensembl: ENSPCAG00000016076

Rattus norvegicus

Synonyms: Norway rat, rats

Outlinks

Ensembl: ENSRNOG00000026969
Ensembl: ENSRNOG00000000488

Sarcophilus harrisii

Synonyms: Tasmanian devil

Outlinks

Ensembl: ENSSHAG00000000115

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Ailuropoda melanoleuca, giant panda
Bos taurus, cattle
Callithrix jacchus, white-tufted-ear marmoset
Canis lupus familiaris, dog
Cavia porcellus, domestic guinea pig
Choloepus hoffmanni, Hoffmann's two-fingered sloth
Dasypus novemcinctus, nine-banded armadillo
Dipodomys ordii, Ord's kangaroo rat
Echinops telfairi, small Madagascar hedgehog
Equus caballus, horse
Erinaceus europaeus, western European hedgehog
Felis catus, domestic cat
Gorilla gorilla gorilla, western lowland gorilla
Homo sapiens, human
Ictidomys tridecemlineatus, thirteen-lined ground squirrel
Loxodonta africana, African savanna elephant
Macaca mulatta, Rhesus monkey
Macropus eugenii, tammar wallaby
Microcebus murinus, gray mouse lemur
Monodelphis domestica, gray short-tailed opossum
Mus musculus, house mouse
Mustela putorius furo, domestic ferret
Myotis lucifugus, little brown bat
Nomascus leucogenys, northern white-cheeked gibbon
Ochotona princeps, American pika
Ornithorhynchus anatinus, platypus
Oryctolagus cuniculus, rabbit
Otolemur garnettii, small-eared galago
Ovis aries, sheep
Pan troglodytes, chimpanzee
Pongo abelii, Sumatran orangutan
Procavia capensis, Cape rock hyrax
Pteropus vampyrus, large flying fox
Rattus norvegicus, Norway rat
Sarcophilus harrisii, Tasmanian devil
Sorex araneus, European shrew
Sus scrofa, pig
Tarsius syrichta, Philippine tarsier
Tupaia belangeri, northern tree shrew
Tursiops truncatus, bottlenose dolphin
Vicugna pacos, alpaca

Expression table

The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology