Classification of Transcription Factors in Mammalia

About TFClass

Search in TFClass:

Go to the search of TRANSFAC



Superclass: , Class: ,
Family: , Subfamily: , Genus: ,
  • 3 Helix-turn-helix domains
    • 3.5 Tryptophan cluster factors
General

Consensus binding sequenceAAGTGAATAACPredicted binding sites For: human, mouse, cow, dogSpecies within this Family: 41 Genera within this Family: 9 LOGO plot of the DNA binding domain
FASTA file of the LogoPlot
DNA binding domain Whole protein
FASTA FASTA file FASTA file
Phylogenetic tree
Mammalia
  • Phylogenetic tree
    Phylogeny.fr and iTOL
  • Phylogenetic tree
    webPRANK and iTOL
  • Phylogenetic tree
    Phylogeny.fr and iTOL
  • Phylogenetic tree
    webPRANK and iTOL
Phylogenetic tree Mammalia
(slim selection)
  • Phylogenetic tree
    webPRANK and iTOL
  • Phylogenetic tree
    Phylogeny.fr and iTOL
  • Phylogenetic tree
    Phylogeny.fr and iTOL
  • Phylogenetic tree
    webPRANK and iTOL
Searches in the label, ID and external references.
These trees (or cladograms, since distances were ignored) were generated with a local installation of PhyML 3.0 (Guindon et al., Systematic Biology, 59(3):307-21, 2010.), by webPRANK at EBI (http://www.ebi.ac.uk/goldman-srv/webprank/), or by the web version of PhyML 3.0 (http://phylogeny.lirmm.fr). The resulting trees were visualized with iTOL v3 (http://itol.embl.de/).
To generate these trees, only the TFs were taken from a selected group of mammalian species. As standard, the corresponding human, cow, mouse and Monodelphis TFs were taken if available; occasionally, either species was to replaced or had to be omitted without replacement.