Classification of Transcription Factors in Mammalia

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, Subfamily:

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1 Basic domains
2 Zinc-coordinating DNA-binding domains
3 Helix-turn-helix domains
- 3.1 Homeo domain factors
  - 3.1.1 HOX
  - 3.1.2 NK
  - 3.1.3 Paired-related HD
    - 3.1.3.1 ALX
    - 3.1.3.2 ARGFX
    - 3.1.3.3 ARX
    - 3.1.3.4 DMBX
    - 3.1.3.5 DPRX
    - 3.1.3.6 DRGX
    - 3.1.3.7 DUX
    - 3.1.3.8 ESX
    - 3.1.3.9 GSC
    - 3.1.3.10 HESX
    - 3.1.3.11 HOPX
    - 3.1.3.12 ISX
    - 3.1.3.13 LEUTX
    - 3.1.3.14 MIX
      - 3.1.3.14.1 MIXL1
    - 3.1.3.15 NOBOX
    - 3.1.3.16 OTP
    - 3.1.3.17 OTX
    - 3.1.3.18 PHOX
    - 3.1.3.19 PITX
    - 3.1.3.20 PROP
    - 3.1.3.21 PRRX
    - 3.1.3.22 RAX
    - 3.1.3.23 RHOX
    - 3.1.3.24 SEBOX
    - 3.1.3.25 SHOX
    - 3.1.3.26 TPRX
    - 3.1.3.27 UNCX
    - 3.1.3.28 VSX
  - 3.1.4 TALE-type HD
  - 3.1.5 HD-LIM
  - 3.1.6 HD-SINE
  - 3.1.7 HD-PROS
  - 3.1.8 HD-ZF
  - 3.1.9 HD-CUT
  - 3.1.10 POU
  - 3.1.11 PHTF
- 3.2 Paired box factors
- 3.3 Fork head / winged helix factors
- 3.4 Heat shock factors
- 3.5 Tryptophan cluster factors
- 3.6 TEA domain factors
- 3.7 ARID
4 Other all-alpha-helical DNA-binding domains
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 30 LOGO plot of the DNA binding sequence

Species specific reports

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Ailuropoda melanoleuca

Synonyms: giant panda

Outlinks

Ensembl: ENSAMEG00000014565

Bos taurus

Synonyms: cattle, domestic cow

Outlinks

Ensembl: ENSBTAG00000002139

Callithrix jacchus

Synonyms: white-tufted-ear marmoset, white ear-tufted marmoset

Outlinks

Ensembl: ENSCJAG00000012740

Cavia porcellus

Synonyms: domestic guinea pig, guinea pig

Outlinks

Ensembl: ENSCPOG00000023482

Echinops telfairi

Synonyms: small Madagascar hedgehog, lesser hedgehog tenrec

Outlinks

Ensembl: ENSETEG00000001372

Equus caballus

Synonyms: horse, equine

Outlinks

Ensembl: ENSECAG00000023100

Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

Outlinks

Ensembl: ENSGGOG00000002122

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000185155
Ensembl: ENSG00000185155
ProteinAtlas: ENSG00000185155 ( with antibody)
TRANSFAC: T04801

Ictidomys tridecemlineatus

Synonyms: thirteen-lined ground squirrel

Outlinks

Ensembl: ENSSTOG00000019392

Loxodonta africana

Synonyms: African savanna elephant, African savannah elephant

Outlinks

Ensembl: ENSLAFG00000022623

Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

Outlinks

Ensembl: ENSMMUG00000005129

Macropus eugenii

Synonyms: tammar wallaby

Outlinks

Ensembl: ENSMEUG00000013276

Microcebus murinus

Synonyms: gray mouse lemur, grey mouse lemur

Outlinks

Ensembl: ENSMICG00000017071

Monodelphis domestica

Synonyms: gray short-tailed opossum

Outlinks

Ensembl: ENSMODG00000005994

Mus musculus

Synonyms: house mouse, mouse

Outlinks

Ensembl: ENSMUSG00000026497
TRANSFAC: T04800

Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

Outlinks

Ensembl: ENSNLEG00000013834

Ochotona princeps

Synonyms: American pika, southern American pika

Outlinks

Ensembl: ENSOPRG00000011384

Ornithorhynchus anatinus

Synonyms: platypus, duckbill platypus

Outlinks

Ensembl: ENSOANG00000001484

Oryctolagus cuniculus

Synonyms: rabbit, rabbits

Outlinks

Ensembl: ENSOCUG00000000103

Otolemur garnettii

Synonyms: small-eared galago

Outlinks

Ensembl: ENSOGAG00000027252

Ovis aries

Synonyms: sheep, wild sheep

Outlinks

Ensembl: ENSOARG00000000055

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl: ENSPTRG00000002047

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl: ENSPPYG00000000166

Procavia capensis

Synonyms: Cape rock hyrax, rock hyrax

Outlinks

Ensembl: ENSPCAG00000009417

Pteropus vampyrus

Synonyms: large flying fox

Outlinks

Ensembl: ENSPVAG00000014686

Rattus norvegicus

Synonyms: Norway rat, rats

Outlinks

Ensembl: ENSRNOG00000048085
Ensembl: ENSRNOG00000003176

Sarcophilus harrisii

Synonyms: Tasmanian devil

Outlinks

Ensembl: ENSSHAG00000008490

Sus scrofa

Synonyms: pig, wild boar

Outlinks

Ensembl: ENSSSCG00000030675

Tarsius syrichta

Synonyms: Philippine tarsier

Outlinks

Ensembl: ENSTSYG00000006569

Tursiops truncatus

Synonyms: bottlenose dolphin, bottle-nosed dolphin

Outlinks

Ensembl: ENSTTRG00000004766