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Classification of Transcription Factors in Mammalia

About TFClass

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Family:

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, Genus:

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1 Basic domains
2 Zinc-coordinating DNA-binding domains
3 Helix-turn-helix domains
- 3.1 Homeo domain factors
  - 3.1.1 HOX
  - 3.1.2 NK
  - 3.1.3 Paired-related HD
  - 3.1.4 TALE-type HD
  - 3.1.5 HD-LIM
  - 3.1.6 HD-SINE
  - 3.1.7 HD-PROS
  - 3.1.8 HD-ZF
  - 3.1.9 HD-CUT
  - 3.1.10 POU
    - 3.1.10.1 POU1
    - 3.1.10.2 POU2
    - 3.1.10.3 POU3
    - 3.1.10.4 POU4
      - 3.1.10.4.1 POU4F1 (Brn-3A, OCT-T1)
      - 3.1.10.4.2 POU4F2 (Brn-3B)
      - 3.1.10.4.3 POU4F3 (Brn-3C)
    - 3.1.10.5 POU5
    - 3.1.10.6 POU6
    - 3.1.10.7 HNF1-like
    - 3.1.10.8 HDX
  - 3.1.11 PHTF
- 3.2 Paired box factors
- 3.3 Fork head / winged helix factors
- 3.4 Heat shock factors
- 3.5 Tryptophan cluster factors
- 3.6 TEA domain factors
- 3.7 ARID
4 Other all-alpha-helical DNA-binding domains
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 17 LOGO plot of the DNA binding sequence

Species specific reports

Jump to human, mouse or rat
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Ailuropoda melanoleuca

Synonyms: giant panda

Outlinks

Ensembl: ENSAMEG00000002442

Cavia porcellus

Synonyms: domestic guinea pig, guinea pig

Outlinks

Ensembl: ENSCPOG00000025218

Felis catus

Synonyms: domestic cat, cats

Outlinks

Ensembl: ENSFCAG00000025350

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000152192
Ensembl: ENSG00000152192
ProteinAtlas: ENSG00000152192 ( without antibody)
TRANSFAC: T09556

Ictidomys tridecemlineatus

Synonyms: thirteen-lined ground squirrel

Outlinks

Ensembl: ENSSTOG00000026743

Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

Outlinks

Ensembl: ENSMMUG00000030683

Monodelphis domestica

Synonyms: gray short-tailed opossum

Outlinks

Ensembl: ENSMODG00000001515

Mus musculus

Synonyms: house mouse, mouse

Outlinks

Ensembl: ENSMUSG00000048349
TRANSFAC: T06590

Mustela putorius furo

Synonyms: domestic ferret, ferret

Outlinks

Ensembl: ENSMPUG00000003335

Ochotona princeps

Synonyms: American pika, southern American pika

Outlinks

Ensembl: ENSOPRG00000004279

Ornithorhynchus anatinus

Synonyms: platypus, duckbill platypus

Outlinks

Ensembl: ENSOANG00000008710

Ovis aries

Synonyms: sheep, wild sheep

Outlinks

Ensembl: ENSOARG00000000183

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl: ENSPTRG00000031154

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl: ENSPPYG00000005428

Rattus norvegicus

Synonyms: Norway rat, rats

Outlinks

Ensembl: ENSRNOG00000009669

Sarcophilus harrisii

Synonyms: Tasmanian devil

Outlinks

Ensembl: ENSSHAG00000013203

Sus scrofa

Synonyms: pig, wild boar

Outlinks

Ensembl: ENSSSCG00000025334

Select species

Selected the species for which a species report should be shown.

Ailuropoda melanoleuca, giant panda
Bos taurus, cattle
Callithrix jacchus, white-tufted-ear marmoset
Canis lupus familiaris, dog
Cavia porcellus, domestic guinea pig
Choloepus hoffmanni, Hoffmann's two-fingered sloth
Dasypus novemcinctus, nine-banded armadillo
Dipodomys ordii, Ord's kangaroo rat
Echinops telfairi, small Madagascar hedgehog
Equus caballus, horse
Erinaceus europaeus, western European hedgehog
Felis catus, domestic cat
Gorilla gorilla gorilla, western lowland gorilla
Homo sapiens, human
Ictidomys tridecemlineatus, thirteen-lined ground squirrel
Loxodonta africana, African savanna elephant
Macaca mulatta, Rhesus monkey
Macropus eugenii, tammar wallaby
Microcebus murinus, gray mouse lemur
Monodelphis domestica, gray short-tailed opossum
Mus musculus, house mouse
Mustela putorius furo, domestic ferret
Myotis lucifugus, little brown bat
Nomascus leucogenys, northern white-cheeked gibbon
Ochotona princeps, American pika
Ornithorhynchus anatinus, platypus
Oryctolagus cuniculus, rabbit
Otolemur garnettii, small-eared galago
Ovis aries, sheep
Pan troglodytes, chimpanzee
Pongo abelii, Sumatran orangutan
Procavia capensis, Cape rock hyrax
Pteropus vampyrus, large flying fox
Rattus norvegicus, Norway rat
Sarcophilus harrisii, Tasmanian devil
Sorex araneus, European shrew
Sus scrofa, pig
Tarsius syrichta, Philippine tarsier
Tupaia belangeri, northern tree shrew
Tursiops truncatus, bottlenose dolphin
Vicugna pacos, alpaca

Expression table

The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology