Transcription factor classification

Status

Please wait ...

Searches in the label, ID and external references.

Superclass:

, Class:

,
Family:

, Subfamily:

, Genus:

1 Basic domains
2 Zinc-coordinating DNA-binding domains
- 2.1 Nuclear receptors with C4 zinc fingers
- 2.2 Other C4 zinc finger-type factors
- 2.3 C2H2 zinc finger factors
  - 2.3.1 Three-zinc finger Krüppel-related
  - 2.3.2 Other factors with up to three adjacent zinc fingers
  - 2.3.3 More than 3 adjacent zinc fingers
  - 2.3.4 Factors with multiple dispersed zinc fingers
    - 2.3.4.1 ZNF417-like
    - 2.3.4.2 ZNF219-like
    - 2.3.4.3 SAL-like
    - 2.3.4.4 Ikaros
    - 2.3.4.5 HIV EP
    - 2.3.4.6 ZBTB1-like
    - 2.3.4.7 RLF-like
    - 2.3.4.8 MAZ-like
    - 2.3.4.9 ZNF532-like
    - 2.3.4.10 ZNF512
    - 2.3.4.11 ZNF658
    - 2.3.4.12 ZNF423-like
    - 2.3.4.13 ZNF639-like
    - 2.3.4.14 EVI1-like
    - 2.3.4.15 BCL11
    - 2.3.4.16 Insulinoma-associated proteins
    - 2.3.4.17 HIC
    - 2.3.4.18 ZNF518
    - 2.3.4.19 Basonuclin
    - 2.3.4.20 TRERF1-like
    - 2.3.4.21 HINFP-like
    - 2.3.4.22 ZNF526-like
    - 2.3.4.23 ZNF319-like
    - 2.3.4.24 ZNF134-like
    - 2.3.4.25 ZNF37A-like
    - 2.3.4.0.1 CASZ1
    - 2.3.4.0.2 ZNF335
    - 2.3.4.0.4 WIZ
    - 2.3.4.0.5 ZNF469
    - 2.3.4.0.6 ZFPM1
    - 2.3.4.0.7 ZBTB4
    - 2.3.4.0.9 ZBTB39
    - 2.3.4.0.10 ZNF295
    - 2.3.4.0.12 PRDM13
    - 2.3.4.0.13 ZNF646
    - 2.3.4.0.14 ZNF579
    - 2.3.4.0.16 PRDM2
    - 2.3.4.0.17 ZNF800
    - 2.3.4.0.18 ZNF618
    - 2.3.4.0.21 ZNF451
    - 2.3.4.0.22 ZNF438
    - 2.3.4.0.24 ZNF507
    - 2.3.4.0.25 ZNF236
    - 2.3.4.0.26 ZNF770
    - 2.3.4.0.28 ZFP57
    - 2.3.4.0.30 ZNF597
    - 2.3.4.0.32 PRDM15
    - 2.3.4.0.33 ZBTB41
    - 2.3.4.0.34 PRDM10
    - 2.3.4.0.36 ZNF513
    - 2.3.4.0.37 ZNF142
    - 2.3.4.0.38 FIZ1
    - 2.3.4.0.40 ZNF784
    - 2.3.4.0.41 ZNF697
    - 2.3.4.0.42 ZKSCAN5
    - 2.3.4.0.44 ZNF775
    - 2.3.4.0.45 ZNF467
    - 2.3.4.0.46 ZNF787
    - 2.3.4.0.48 ZNF48
    - 2.3.4.0.49 ZNF629
    - 2.3.4.0.50 ZNF668
    - 2.3.4.0.51 ZNF101
    - 2.3.4.0.52 ZNF251
    - 2.3.4.0.53 ZNF445
    - 2.3.4.0.56 ZSCAN20
    - 2.3.4.0.57 ZNF674
    - 2.3.4.0.60 ZNF788
    - 2.3.4.0.63 ZNF778
    - 2.3.4.0.68 ZNF519
    - 2.3.4.0.69 ZNF304
    - 2.3.4.0.70 ZNF132
    - 2.3.4.0.72 ZBTB17
    - 2.3.4.0.73 ZNF407
    - 2.3.4.0.74 E4F1
    - 2.3.4.0 unclassified
    - 2.3.4.0.3 PRDM8
    - 2.3.4.0.8 ZBTB38
    - 2.3.4.0.15 RREB1
    - 2.3.4.0.19 ZNF277
    - 2.3.4.0.23 PEG3
    - 2.3.4.0.27 REST
    - 2.3.4.0.31 PRDM4
    - 2.3.4.0.35 ZNF341
    - 2.3.4.0.39 ZNF628
    - 2.3.4.0.43 ZNF316
    - 2.3.4.0.59 ZNF195
    - 2.3.4.0.67 ZNF606
    - 2.3.4.0.71 PRDM9
    - 2.3.4.0.75 ZNF462
    - 2.3.4.0.76 ZNF644
  - 2.3.5 BED zinc finger factors
- 2.5 DM-type intertwined zinc finger factors
- 2.6 CXXC zinc finger factors
- 2.7 C2HC
- 2.8 C3H zinc finger factors
- 2.9 C2CH THAP-type zinc finger factors
3 Helix-turn-helix domains
4 Other all-alpha-helical DNA-binding domains
5 alpha-Helices exposed by beta-structures
6 Immunoglobulin fold
7 beta-Hairpin exposed by an alpha/beta-scaffold
8 beta-Sheet binding to DNA
9 beta-Barrel DNA-binding domains
0 Yet undefined DNA-binding domains

General

Species within this Genus: 17

Species specific reports

Jump to human, mouse or rat
Hint: You can rearrange the panels by drag-and-drop. The new arrangement will persist during your session.

Bos taurus

Synonyms: cattle, domestic cow

Outlinks

Ensembl gene: ENSBTAG00000003267

Canis lupus familiaris

Synonyms: dog, dogs

Outlinks

Ensembl: ENSCAFG00000029721

Choloepus hoffmanni

Synonyms: Hoffmann's two-fingered sloth, Hoffmann's two-toed sloth

Outlinks

Ensembl gene: ENSCHOG00000012850
UniProt: NA

Equus caballus

Synonyms: horse, equine

Outlinks

Ensembl gene: ENSECAG00000016375

Felis catus

Synonyms: domestic cat, cats

Outlinks

Ensembl gene: ENSFCAG00000023442

Gorilla gorilla gorilla

Synonyms: western lowland gorilla, lowland gorilla

Outlinks

Ensembl gene: ENSGGOG00000009784

Homo sapiens

Synonyms: human, man

Outlinks

BioGPS: ENSG00000131849
Ensembl gene: ENSG00000131849
ProteinAtlas: ENSG00000131849 ( with antibody)
TRANSFAC: T20368
UniProt: P52740

Protein expression pattern:Show tableIsoforms and DNA binding domain

Loxodonta africana

Synonyms: African savanna elephant, African savannah elephant

Outlinks

Ensembl gene: ENSLAFG00000022570
UniProt: NA

Macaca mulatta

Synonyms: Rhesus monkey, rhesus monkeys

Outlinks

Ensembl gene: ENSMMUG00000000775

Microcebus murinus

Synonyms: gray mouse lemur, grey mouse lemur

Outlinks

Ensembl gene: ENSMICG00000016521
UniProt: NA

Nomascus leucogenys

Synonyms: northern white-cheeked gibbon, White-cheeked Gibbon

Outlinks

Ensembl gene: ENSNLEG00000011153
UniProt: NA

Ovis aries

Synonyms: sheep, wild sheep

Outlinks

Ensembl gene: ENSOARG00000019938

Pan troglodytes

Synonyms: chimpanzee

Outlinks

Ensembl gene: ENSPTRG00000011593

Pongo abelii

Synonyms: Sumatran orangutan, orang utan

Outlinks

Ensembl gene: ENSPPYG00000010504

Pteropus vampyrus

Synonyms: large flying fox

Outlinks

Ensembl gene: ENSPVAG00000013967
UniProt: NA

Tarsius syrichta

Synonyms: Philippine tarsier

Outlinks

Ensembl: ENSTSYG00000004813

Tursiops truncatus

Synonyms: bottlenose dolphin, bottle-nosed dolphin

Outlinks

Ensembl gene: ENSTTRG00000001992
UniProt: NA

Select species

Selected the species for which a species report should be shown.

Ailuropoda melanoleuca, giant panda
Bos taurus, cattle
Callithrix jacchus, white-tufted-ear marmoset
Canis lupus familiaris, dog
Cavia porcellus, domestic guinea pig
Choloepus hoffmanni, Hoffmann's two-fingered sloth
Dasypus novemcinctus, nine-banded armadillo
Dipodomys ordii, Ord's kangaroo rat
Echinops telfairi, small Madagascar hedgehog
Equus caballus, horse
Erinaceus europaeus, western European hedgehog
Felis catus, domestic cat
Gorilla gorilla gorilla, western lowland gorilla
Homo sapiens, human
Ictidomys tridecemlineatus, thirteen-lined ground squirrel
Loxodonta africana, African savanna elephant
Macaca mulatta, Rhesus monkey
Macropus eugenii, tammar wallaby
Microcebus murinus, gray mouse lemur
Monodelphis domestica, gray short-tailed opossum
Mus musculus, house mouse
Mustela putorius furo, domestic ferret
Myotis lucifugus, little brown bat
Nomascus leucogenys, northern white-cheeked gibbon
Ochotona princeps, American pika
Ornithorhynchus anatinus, platypus
Oryctolagus cuniculus, rabbit
Otolemur garnettii, small-eared galago
Ovis aries, sheep
Pan troglodytes, chimpanzee
Pongo abelii, Sumatran orangutan
Procavia capensis, Cape rock hyrax
Pteropus vampyrus, large flying fox
Rattus norvegicus, Norway rat
Sarcophilus harrisii, Tasmanian devil
Sorex araneus, European shrew
Sus scrofa, pig
Tarsius syrichta, Philippine tarsier
Tupaia belangeri, northern tree shrew
Tursiops truncatus, bottlenose dolphin
Vicugna pacos, alpaca

Expression table

The table below summarizes the protein expression data from the Protein Atlas. The tissues and cell types are linked to the Cytomer ontology

pp12345pp

Tissue	Cell type	Expression level	Type	Reliability
adrenal gland	glandular tissue	Moderate	Staining	Uncertain
appendix	glandular tissue	Moderate	Staining	Uncertain
appendix	lymphoid tissue	Negative	Staining	Uncertain
bone barrow	hematopoetic stem cell	Weak	Staining	Uncertain
breast	glandular tissue	Moderate	Staining	Uncertain
bronchi	ciliated call with propulsive function of respiratory tract	Moderate	Staining	Uncertain
cerebellum	granule cell	Strong	Staining	Uncertain
cerebellum		Strong	Staining	Uncertain
cerebellum	purkinje cell	Strong	Staining	Uncertain
cerebral cortex	glial cell of central nervous system	Strong	Staining	Uncertain
cerebral cortex	neuron	Strong	Staining	Uncertain
cervix of uterus	glandular tissue	Moderate	Staining	Uncertain
cervix of uterus	squamous epithelial cell	Negative	Staining	Uncertain
colon	glandular tissue	Weak	Staining	Uncertain
duodenum	glandular tissue	Weak	Staining	Uncertain

pp12345pp

Classification of Transcription Factors in Mammalia

About TFClass

Search in TFClass:

Species specific reports

Classification of Transcription Factors in Mammalia

About TFClass

Search in TFClass: ?PrimeFaces.cw('Button','widget_classificationForm_searchHelpButton',{id:'classificationForm:searchHelpButton'});

Species specific reports

Search in TFClass: